Cellxgene Gateway - HOME


Links:

View Datasets Here.
ANDARA88

How To Upload Data via SSH and SCP:

  1. Confirm that your ssh key has been properly added. Running the following command should connect you to the server: 
    2. ssh ec2-user@None
  2. Prepare your data on your own machine. They should be in a common folder called 'USER' and should look
    similar to the following structure: 
    3. - USER
    - hpc.h5ad
    - pbmc3k.h5ad
  3. Copy your data to the server (replace USER with your username):
    4. ssh ec2-user@None 'mkdir -p /root/soft/cellxgene-gateway/data//USER/'
ssh ec2-user@None 'mkdir -p /root/soft/cellxgene-gateway/data//USER/DATA/'
scp -r pbmc3k.h5ad ec2-user@None:/root/soft/cellxgene-gateway/data//USER/DATA/
  4. Take a look at your data using the file crawler link above